All Classes

AbbrevGroupRecognizer AbstractAlchemistMoleculeEditor AbstractAlchemistMoleculeEditor.MoleculeIndexArray AbstractAlchemistMoleculeView AbstractConfigElementEditor AbstractConfigurationReader AbstractConfigurationWriter AbstractMRecordReader AbstractSketchConfigElement Alchemist AlchemistApplication AlchemistApplication.ExitApplicationAction AlchemistApplication.LicenseManagerAction AlchemistApplication.NewDocumentAction AlchemistApplication.OpenDocumentAction AlchemistApplication.SaveDocumentAction AlchemistApplication.SaveDocumentAsAction AlchemistApplicationInnerDialog AlchemistApplicationLicenseHandlerInnerDialog AlchemistBanner AlchemistBrowserLauncher AlchemistComponentSet AlchemistController AlchemistDashedBorder AlchemistError AlchemistFileChooser AlchemistFileTextBox AlchemistGlassPage AlchemistGraphicsUtilities AlchemistIconFactory AlchemistLabel AlchemistLaunchable AlchemistLauncher AlchemistLinearMoleculeView AlchemistMViewAccessory AlchemistMoleculeEditor AlchemistMoleculePainter AlchemistMoleculeUtilities AlchemistMoleculeView AlchemistPage AlchemistProfile AlchemistProfileSupport AlchemistProgressLabel AlchemistProgressMonitor AlchemistProgressObject AlchemistSpinBox AlchemistSplashScreen AlchemistSplitPane AlchemistState AlchemistTableSizeConfigurerComponent AlchemistTask AlchemistUtilities AngleMonitor AtomContext AtomProperty AutoMapper BCUT BCUTGenerator BCUTParameters Base64Recognizer BasicConfigElement BasicConfigElementEditor BoundingBox CDParameters CEdge CFGenerator CFParameters CGraph CNode CTransform3D CalculatorPlugin CalculatorPluginDisplay CalculatorPluginOutput Cancelable CellOrComponentId ChargePlugin CheckBoxList ChemContext ChemJEP ChemicalFingerprint ChimeRecognizer CleanUtil CommandPlugger Common Compare ComponentElement CompositeInputProducer CompositeWorkUnit CompositeWorkUnitFactory ConcurrentProcessor ConcurrentProcessors ConfigBuilder ConfigBuilderItemPanelHolder ConfigBuilderListCellRenderer ConfigBuilderPanel ConfigBuilderPanelFactory ConfigElement ConfigElementEditor ConfigElementFactory ConfigElementListCellRenderer ConfigElementPresentationChooser ConfigElementSketchEditor ConfigElementTransferHandler ConfigItem ConfigItemGroup ConfigItemList ConfigItemPanel ConfigItemTransferHandler ConfigurationReaderFactory ConformerPlugin ConnectionHandler Control CopyOptConstants CubeRecognizer CustomDescriptor CutBondReviser DPoint3 DataSgroup DatabaseProperties DatabaseSearchException DatabaseTools DihedralControl DihedralMonitor DispOptConsts DistanceMonitor DotfileUtil ElementalAnalyser ElementalAnalyserPlugin EmptyPanel EnumerationPlugin ErrorHandler Evaluator ExhaustiveAlgorithm ExhaustiveFragmenter Expandable Exporter ExternalEditorSupport FileFilterFactory FileListHandlerPanel FingerprintGenerator Fragmenter GenerateMD GeometryPlugin GlobalLocationControl GlobalOrientationControl GraphicCell GraphicComponent GraphicScene GroupEditor HAcc HBDAPlugin HBParameters HDon HTMLTools HTMLUtil HashCode Heavy HelpTextPanelFactory HitColoringAndAlignmentOptions HitDisplayTool HitDisplayUtil HuckelAnalysisPlugin IUPACNamer IUPACNamer.Error IUPACNamer.TimeoutError IUPACNamer.UnsupportedError IUPACNamingPlugin Importer InputProducer IntArray IonChargePlugin IsoelectricPointPlugin JChemSearch JChemSearch.DissimilarityMetrics JChemSearchOptions JTFRecognizer JarvisPatrick LDParameters Label LibraryMCS LicenseManager LinearAlgorithm ListableMolecule LocalLocationControl LocalOrientationControl LogD LogP logDPlugin logPPlugin MAtomSetPoint MBooleanProp MBracket MCS MChemicalStruct MCollectionProp MDArrayReader MDDBReader MDDBWriter MDFileReader MDFileWriter MDHitEvaluator MDHypothesisCreator MDHypothesisGenerator MDMetricOptimizer MDParameters MDReader MDSet MDSetParameters MDSimilarity MDSimilarityResultWriter MDTableHandler MDWriter MDocStorage MDocStorage.Listener MDocument MDoubleArrayProp MDoubleProp MEFlow MFileFormat MFileFormatUtil MFont MHCoords3DProp MHashProp MIntegerArrayProp MIntegerProp MListProp MMidPoint MMidPoint.Sticky MMoleculeProp MObject MObjectProp MPainterUtil MPoint MPolyline MProgressMonitor MProp MPropertyContainer MRecord MRecordImporter MRecordParseException MRecordReader MRecordReader.Position MRectangle MRectanglePoint MRectanglePoint.Sticky MSAPlugin MSelectionDocument MSketch MSketchPane MSketchPaneBeanInfo MSpaceEasy MStringProp MTextAttributes MTextBox MTextDocument MTextDocument.Section MTransformable MView MViewPane MViewPaneBeanInfo MacroMolecule MacroMolecule.BondMaker MacroMoleculeComponent MacroMoleculeComponent.MoleculeVisualizer MajorMicrospeciesAccessorPlugin MajorMicrospeciesPlugin MarkushEnumerationPlugin MarvinPane MarvinPaneBeanInfo Mass MatchCountOptions MaxSearchFrequencyExceededException MdlCompressor MeasurementMonitor MetabolizerIndexGenerator Metrics MolAligner MolAtom MolBond MolComparator MolCondition MolContext MolConverter MolExport MolExportException MolExportException MolExportModule MolExportModule MolExporter MolFilter MolFormatException MolHandler MolImageSize MolImport MolImportModule MolImporter MolInputProducer MolInputStream MolPrinter MolSearch MolSearchOptions MolecularDescriptor MolecularDescriptorGenerator MolecularDynamicsPlugin MolecularSurfaceComponent Molecule MoleculeComponent MoleculeGraph MoleculeIterator MoleculeIterators MoleculeIterators.AtomIteratorInterface MoleculeIterators.AtomPropertyInterface MoleculeIterators.BondIteratorInterface MoleculeIterators.MoleculeInterface MoleculeSet MoleculeTableCellEditor MoleculeTableCellRenderer Monitor MultipleSgroup NearestNeighbors NumberedComboBoxRenderer NumberedRenderer OptimizeMetrics OptionDescriptor OptionsPane OrbitalElectronegativityPlugin PDBReader PDBRecognizer PFParameters PMap PMapper PSymbols ParameterPanel ParameterPanelHandler ParameterTab PeptideRecognizer PeriodicSystem PharmacophoreArrow PharmacophoreFingerprint PharmacophorePoint PluginException PluginExecutionException PluginFactory PluginWorkUnit PolarizabilityPlugin PositionMonitor PositionedInputStream PresentationChooser ProgressPanel ProgressWriter ProgressWriter.Logger PropertyNotSetException pKaPlugin QueryBond RFGenerator RFParameters RGroupDecomposition RandomAlgorithm Reaction ReactionContext ReactionException ReactionFingerprint Reactor Recap Recognizer RecognizerList RefractivityPlugin ResizeControl ResonancePlugin ReusableInputProducer ReusablePluginWorkUnit ReusablePluginWorkUnitFactory RgMolecule RxnMolecule SDParameters SMILESRecognizer ScalarDescriptor ScrollableCellEditor Search SearchConstants SearchContext SearchOptions SelectionMolecule Sgroup SgroupAtom Similarity SimpleAlchemistMoleculeView StandardizedMolSearch Standardizer Standardizer StandardizerException StereoConstants StereoisomerPlugin StructureTableOptions SuperatomSgroup SurfaceColoring SurfaceComponent SwingUtil SwingWorker SynthesisAlgorithm SynthesisGraph SynthesisGraph.Edge SynthesisGraph.Node Synthesizer TPSA TPSAPlugin TableStatistics TableTypeConstants TautomerizationPlugin TopologyAnalyser TopologyAnalyserPlugin TransferException UpdateHandler UpdateHandlerException Updater UploadThread UserSettings VersionInfo VersionInfo Ward WorkUnit WorkUnitFactory