chemaxon.alchemist.utils
Class AbstractAlchemistMoleculeEditor

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  chemaxon.alchemist.utils.AbstractAlchemistMoleculeView
                      chemaxon.alchemist.utils.AlchemistMoleculeView
                          chemaxon.alchemist.utils.AbstractAlchemistMoleculeEditor

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

Direct Known Subclasses:

AlchemistMoleculeEditor

public abstract class AbstractAlchemistMoleculeEditor
extends AlchemistMoleculeView

See Also:

Serialized Form

Nested Class Summary

protected static class

AbstractAlchemistMoleculeEditor.MoleculeIndexArray

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected javax.swing.AbstractAction	ADD_MOLECULE_ACTION Action for perform add molecule to the editor.
protected javax.swing.AbstractAction	APPLY_MOLECULE_EDIT_ACTION This method applies performed molecule modification action
protected javax.swing.AbstractAction	CANCEL_MOLECULE_EDIT_ACTION This method cancels performed molecule modification action
protected javax.swing.AbstractAction	EDIT_MOLECULE_ACTION Action for perform edit selected molecule.
protected boolean	isLoading
protected javax.swing.event.SwingPropertyChangeSupport	notifier
static java.lang.String	PROPERTY_KEY_ADDED
static java.lang.String	PROPERTY_KEY_EDITED
static java.lang.String	PROPERTY_KEY_REMOVED
protected javax.swing.AbstractAction	REMOVE_MOLECULE_ACTION This method removes the selected molecule from the table.
protected MSketchPane	sketch

Fields inherited from class chemaxon.alchemist.utils.AlchemistMoleculeView

columnComboBox, currentRowNum, DEFAULT_MAX_COLNUM, DEFAULT_MAX_ROWNUM, inputStream, isToolbarVisible, maxColNum, maxMolecules, maxRowNum, percent, rowComboBox, scrollBar, source

Fields inherited from class chemaxon.alchemist.utils.AbstractAlchemistMoleculeView

colNum, dataModel, holderPanel, rowNum, view

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

AbstractAlchemistMoleculeEditor(int defaultRowNum, int defaultColNum, int maxRowNum, int maxColNum, javax.swing.event.SwingPropertyChangeSupport notifier, MSketchPane sketch)

AbstractAlchemistMoleculeEditor(int defaultRowNum, int defaultColNum, javax.swing.event.SwingPropertyChangeSupport notifier, MSketchPane sketch)
Constructor from superclass

Method Summary

void	addMolecule() AddMolecule action handler
void	applyChanges() Apply Changes action handler
void	cancelChanges() Cancel Changes action handler
void	clear() This method clears the editor, and closes the input stream
void	editMolecule() EditMolecule action handler
javax.swing.AbstractAction	getADD_MOLECULE_ACTION()
javax.swing.AbstractAction	getAPPLY_MOLECULE_EDIT_ACTION()
javax.swing.AbstractAction	getCANCEL_MOLECULE_EDIT_ACTION()
javax.swing.AbstractAction	getEDIT_MOLECULE_ACTION()
int	getMoleculeCount() Returns the number of the molecules in the editor
Molecule[]	getMolecules() This method returns all the molecules from the editor Warning!
javax.swing.AbstractAction	getREMOVE_MOLECULE_ACTION()
int	getScrollPosition()
boolean	hasModified()
protected abstract void	hideEditor()
void	importMolecules(java.io.InputStream inputStream) This method load the molecule from the given stream
void	importMolecules(Molecule[] molecules) This method imports molecules array to the editor
void	importMolecules(java.lang.String path) This method loads the molecule file from given path
boolean	isMoleculeSelected()
boolean	isNonEmptyCellSelected() Returns if there is a non-empty cell selected
protected void	refreshGridLayout()
protected void	refreshView() This method refreshes the molecule view depending on storage
void	removeMolecule() RemoveMolecule action handler
void	setEnabled(boolean enabled) Sets enabled property
void	setScrollPosition(int position)
protected abstract void	showEditor()
void	writeToFile(java.io.File file) Writes the editor's content into the given file with smiles format
void	writeToFile(java.io.File file, java.lang.String format) Writes the editor's content into the given file with the given format
void	writeToStream(java.io.OutputStream outputStream, java.lang.String format) Writes the editor's content into the given file with the given format

Methods inherited from class chemaxon.alchemist.utils.AlchemistMoleculeView

addListSelectionListerer, close, decreaseView, getColCount, getMaxColCount, getMaxRowCount, getProgressPercentage, getRowCount, getTopPanel, getView, increaseView, removeListSelectionListener, setColCount, setRowCount

Methods inherited from class chemaxon.alchemist.utils.AbstractAlchemistMoleculeView

GetDispOpts, getHolderPanel, isMoleculeLabelVisible, SetDispOpts, setMinimumSize, setMoleculeLabelVisible

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

isLoading

protected boolean isLoading

sketch

protected MSketchPane sketch

notifier

protected javax.swing.event.SwingPropertyChangeSupport notifier

ADD_MOLECULE_ACTION

protected final javax.swing.AbstractAction ADD_MOLECULE_ACTION

Action for perform add molecule to the editor. Hides viewer panel, and shows editor panel.

EDIT_MOLECULE_ACTION

protected final javax.swing.AbstractAction EDIT_MOLECULE_ACTION

Action for perform edit selected molecule. Sets selected molecule into editor. Hides viewer panel, and shows editor pane

APPLY_MOLECULE_EDIT_ACTION

protected final javax.swing.AbstractAction APPLY_MOLECULE_EDIT_ACTION

This method applies performed molecule modification action

CANCEL_MOLECULE_EDIT_ACTION

protected final javax.swing.AbstractAction CANCEL_MOLECULE_EDIT_ACTION

This method cancels performed molecule modification action

REMOVE_MOLECULE_ACTION

protected final javax.swing.AbstractAction REMOVE_MOLECULE_ACTION

This method removes the selected molecule from the table.

PROPERTY_KEY_EDITED

public static final java.lang.String PROPERTY_KEY_EDITED

See Also:

Constant Field Values

PROPERTY_KEY_ADDED

public static final java.lang.String PROPERTY_KEY_ADDED

See Also:

Constant Field Values

PROPERTY_KEY_REMOVED

public static final java.lang.String PROPERTY_KEY_REMOVED

See Also:

Constant Field Values

Constructor Detail

AbstractAlchemistMoleculeEditor

public AbstractAlchemistMoleculeEditor(int defaultRowNum,
                                       int defaultColNum,
                                       javax.swing.event.SwingPropertyChangeSupport notifier,
                                       MSketchPane sketch)

Constructor from superclass

Parameters:

defaultRowNum -

defaultColNum -

notifier -

AbstractAlchemistMoleculeEditor

public AbstractAlchemistMoleculeEditor(int defaultRowNum,
                                       int defaultColNum,
                                       int maxRowNum,
                                       int maxColNum,
                                       javax.swing.event.SwingPropertyChangeSupport notifier,
                                       MSketchPane sketch)

Method Detail

importMolecules

public void importMolecules(java.lang.String path)

This method loads the molecule file from given path

Overrides:

importMolecules in class AlchemistMoleculeView

Parameters:

path - is the path to molecule file

importMolecules

public void importMolecules(java.io.InputStream inputStream)

Description copied from class: AlchemistMoleculeView

This method load the molecule from the given stream

Overrides:

importMolecules in class AlchemistMoleculeView

refreshView

protected void refreshView()

This method refreshes the molecule view depending on storage

Overrides:

refreshView in class AlchemistMoleculeView

refreshGridLayout

protected void refreshGridLayout()

Overrides:

refreshGridLayout in class AlchemistMoleculeView

getMoleculeCount

public int getMoleculeCount()

Returns the number of the molecules in the editor

Returns:

int

writeToFile

public void writeToFile(java.io.File file)

Writes the editor's content into the given file with smiles format

Parameters:

file -

writeToFile

public void writeToFile(java.io.File file,
                        java.lang.String format)

Writes the editor's content into the given file with the given format

Parameters:

file -

format -

writeToStream

public void writeToStream(java.io.OutputStream outputStream,
                          java.lang.String format)
                   throws MolFormatException,
                          java.io.IOException,
                          java.io.EOFException

Writes the editor's content into the given file with the given format

Parameters:

outputStream - is the stream to write into

format - is the export format string

Throws:

MolFormatException

java.io.IOException

java.io.EOFException

importMolecules

public void importMolecules(Molecule[] molecules)

This method imports molecules array to the editor

Parameters:

molecules -

getMolecules

public Molecule[] getMolecules()

This method returns all the molecules from the editor Warning! All the molecules will be cloned!

Returns:

all the molecules from the editor

showEditor

protected abstract void showEditor()

hideEditor

protected abstract void hideEditor()

hasModified

public boolean hasModified()

clear

public void clear()

This method clears the editor, and closes the input stream

Overrides:

clear in class AlchemistMoleculeView

setEnabled

public void setEnabled(boolean enabled)

Description copied from class: AlchemistMoleculeView

Sets enabled property

Overrides:

setEnabled in class AlchemistMoleculeView

getScrollPosition

public int getScrollPosition()

setScrollPosition

public void setScrollPosition(int position)

getADD_MOLECULE_ACTION

public javax.swing.AbstractAction getADD_MOLECULE_ACTION()

getEDIT_MOLECULE_ACTION

public javax.swing.AbstractAction getEDIT_MOLECULE_ACTION()

getAPPLY_MOLECULE_EDIT_ACTION

public javax.swing.AbstractAction getAPPLY_MOLECULE_EDIT_ACTION()

getCANCEL_MOLECULE_EDIT_ACTION

public javax.swing.AbstractAction getCANCEL_MOLECULE_EDIT_ACTION()

getREMOVE_MOLECULE_ACTION

public javax.swing.AbstractAction getREMOVE_MOLECULE_ACTION()

isMoleculeSelected

public boolean isMoleculeSelected()

isNonEmptyCellSelected

public boolean isNonEmptyCellSelected()

Returns if there is a non-empty cell selected

Returns:

true if there is a non-empty cell selected

addMolecule

public void addMolecule()

AddMolecule action handler

editMolecule

public void editMolecule()

EditMolecule action handler

removeMolecule

public void removeMolecule()

RemoveMolecule action handler

applyChanges

public void applyChanges()

Apply Changes action handler

cancelChanges

public void cancelChanges()

Cancel Changes action handler